HsaEX0013757 @ hg19

Exon Skipping

Gene

ENSG00000177575 | CD163

Description

CD163 molecule [Source:HGNC Symbol;Acc:1631]

Coordinates

chr12:7635562-7638012:-

Coord C1 exon

chr12:7637692-7638012

Coord A exon

chr12:7635963-7636271

Coord C2 exon

chr12:7635562-7635600

Length

309 bp

Sequences

Splice sites

3' ss Seq

ACATGTCTCTGATTTTTCAGACA

3' ss Score

8.46

5' ss Seq

CAGGTAAGT

5' ss Score

10.86

Exon sequences

Seq C1 exon

AATTCATGTCTCTGAGACTGACCAGTGAAGCCAGCAGAGAGGCCTGTGCAGGGCGTCTGGAAGTTTTTTACAATGGAGCTTGGGGCACTGTTGGCAAGAGTAGCATGTCTGAAACCACTGTGGGTGTGGTGTGCAGGCAGCTGGGCTGTGCAGACAAAGGGAAAATCAACCCTGCATCTTTAGACAAGGCCATGTCCATTCCCATGTGGGTGGACAATGTTCAGTGTCCAAAAGGACCTGACACGCTGTGGCAGTGCCCATCATCTCCATGGGAGAAGAGACTGGCCAGCCCCTCGGAGGAGACCTGGATCACATGTGACA

Seq A exon

ACAAGATAAGACTTCAGGAAGGACCCACTTCCTGTTCTGGACGTGTGGAGATCTGGCATGGAGGTTCCTGGGGGACAGTGTGTGATGACTCTTGGGACTTGGACGATGCTCAGGTGGTGTGTCAACAACTTGGCTGTGGTCCAGCTTTGAAAGCATTCAAAGAAGCAGAGTTTGGTCAGGGGACTGGACCGATATGGCTCAATGAAGTGAAGTGCAAAGGGAATGAGTCTTCCTTGTGGGATTGTCCTGCCAGACGCTGGGGCCATAGTGAGTGTGGGCACAAGGAAGACGCTGCAGTGAATTGCACAG

Seq C2 exon

ATATTTCAGTGCAGAAAACCCCACAAAAAGCCACAACAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000177575-'10-12,'10-11,11-12

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.405

Domain overlap (PFAM):

C1:

PF0053013=SRCR=WD(100=90.7)

A:

PF0053013=SRCR=WD(100=94.2)

C2:

PF0168214=DB=FE(19.0=100),PF135841=BatD=FE(13.0=100),PF063657=CD34_antigen=FE(11.7=100),PF066977=DUF1191=FE(11.8=100),PF151021=TMEM154=FE(13.6=100),PF118373=DUF3357=FE(14.8=100),PF097774=OSTMP1=FE(15.2=100),PF0769011=MFS_1=PU(1.4=7.7)

Main Inclusion Isoform:

ENSP00000352071