RnoEX6015009 @ rn6
Exon Skipping
Gene
ENSRNOG00000010253 | Cd163
Description
CD163 molecule [Source:RGD Symbol;Acc:1310382]
Coordinates
chr4:156767018-156779370:+
Coord C1 exon
chr4:156767018-156767338
Coord A exon
chr4:156778461-156778772
Coord C2 exon
chr4:156779341-156779370
Length
312 bp
Sequences
Splice sites
3' ss Seq
TCTGATTTCTTTTTTTCCAGACA
3' ss Score
9.05
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
AGTTCATGTCTCTGAGGCTGACCAATGAAGCCCACAGAGTGAACTGTACAGGCCGTCTGGAAGTGTTTTACAATGGTACATGGGGCAGTATTGGCAGCAGCAATATGTCTCCAACCACTGTGGGGGTGGTGTGCCGTCAGCTGGGCTGTGCAGACAATGGAACAGTGAAACCTACATCTTCAGACAAGACACCAACCAGGCCCATGTGGACAGATAGTGTGCAGTGTCCAAAAGGAGTTGACACTTTGTGGCAGTGCCCCTCATCACCTTGGAAACAGAGACAAGCCAGCCCCTCCCAGGAGTCCTGGATTGTCTGTGACG
Seq A exon
ACAAAATAAGACTACAGGAAGGGCATACAGACTGTTCTGGACGTGTGGAGATCTGGCATAGAGGTTCCTGGGGAACAGTGTGTGATGACTCCTGGGATCTTAATGATGCTGAGGTTGCATGTAAGCAGCTGGGCTGTGGTCAAGCTGTGGAGGCACTAAAAGAAGCAGCATTTGGTCCAGGAACTGGGCCCATATGGCTGAATGAAATGAAGTGTAGAGGGAATGAGTCTTCCCTGTGGGATTGTCCTGCCAGACCATGGAGTCACAGCGACTGCGGGCACAAAGAAGATGCTTCTGTGAAGTGCCTCCCAA
Seq C2 exon
GAATGACTTTAGAATCACAGCATGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010253-'11-16,'11-15,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.157 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=89.8)
A:
PF0053013=SRCR=WD(100=93.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGTCTCTGAGGCTGACCA
R:
CTGTGCCATGCTGTGATTCTA
Band lengths:
348-660
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]