MmuEX6007315 @ mm9
Exon Skipping
Gene
ENSMUSG00000047228 | BC048546
Description
cDNA sequence BC048546 [Source:MGI Symbol;Acc:MGI:3039594]
Coordinates
chr6:128496267-128498702:-
Coord C1 exon
chr6:128498622-128498702
Coord A exon
chr6:128497175-128497340
Coord C2 exon
chr6:128496267-128496478
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCCAACCCCAACTAGTTT
3' ss Score
4.74
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GGCCGTGAGGGTGACCAGGAAGATATTGCGCTCACTGCGTACGTCGTCGGGGTGTTCCTTGAAGTTGGACTCAATGCCAGC
Seq A exon
TTTCCTGCCCTCCGCAATGGTCTCTATTGCCTGGAAGAGGCATTTTCGAATGGTGTCACCAATGGCTACACGCAAGCTATTCTGGCTTATGTATTTGCATTAGCTGGGAAAGAACAGCAAGCGAAATCCTTACTCTCAATCCTGGACAAATCTGCTACAAAAACAA
Seq C2 exon
ATAATATGATATACTGGGAGAGAGATGAGAAACCCGAGACAGACAACTCTCCATCATTCATTCCTTCGGCACTTTCTGGTGAGACAGAGAAGACGTGCTATGTGCTGCTGGCTGTCCTTTCCCAGGACACTCAGGACCTTGATTATGCCAGCAAGATTGTGCAGTGGCTTGCCCAGCGGATGAACTCCCATGGAGGCTTCTCTGCCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047228-'27-27,'27-26,28-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.197
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(10.5=100)
A:
PF076789=A2M_comp=FE(22.2=100)
C2:
PF076789=A2M_comp=FE(28.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCAGGAAGATATTGCGCT
R:
CAAGCCACTGCACAATCTTGC
Band lengths:
242-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: