BtaEX6024043 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101175525-101178324:+
Coord C1 exon
chr5:101175525-101175599
Coord A exon
chr5:101176660-101176825
Coord C2 exon
chr5:101178113-101178324
Length
166 bp
Sequences
Splice sites
3' ss Seq
GAATTGTTCTTCTTGACTAGTTT
3' ss Score
5.18
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTTGGAGATGAAGAGGACGTTGTACTCACTGCCTATATCGTTGCTGCATTCCTTGAAGCTGGACTCAATTTCACT
Seq A exon
TTTCCCGCTCTACGAAATGGGCTCTTTTGCTTAGAAGAGGCCTTGGAAAATGGTGTCAGAAATGGCTACAACCTTGCAGTTCTAGCTTATGCTTTTGCATTGGCTGGAAAAGAGGAGAAAGTGGAATCCTTACTCCGGACCCTGGATCAATCTGCTACAAAATTAA
Seq C2 exon
ATAATGTGATATATTGGGGAAAAGCGAAGAAACTCAAGACAGAGGCATCTCCACTCTTTATTCCTTGGGCACCTTCTGCTGAGATAGAGAAGACTTGCTATGTGCTGTTGGCTATCATTTCCCAGAAAAACCCTGACCTGACCTACGCTAGTAAGATTGTTCAGTGGCTTGCCCAACAGATGAATTCTCACGGAGGCTTCTCCTCCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243-'27-27,'27-26,28-27=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(9.8=100)
A:
PF076789=A2M_comp=FE(22.4=100)
C2:
PF076789=A2M_comp=FE(28.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACGTTGTACTCACTGCCT
R:
TTCATCTGTTGGGCAAGCCAC
Band lengths:
246-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]