RnoEX6015276 @ rn6
Exon Skipping
Gene
ENSRNOG00000007247 | A2ml1
Description
alpha-2-macroglobulin-like 1 [Source:RGD Symbol;Acc:1565709]
Coordinates
chr4:161871617-161874118:-
Coord C1 exon
chr4:161874038-161874118
Coord A exon
chr4:161872537-161872702
Coord C2 exon
chr4:161871617-161871828
Length
166 bp
Sequences
Splice sites
3' ss Seq
ATCTTCCCCCCCCCAACTAGTTT
3' ss Score
6.72
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
TCTCAGGACAGTGACGAGGATGATATCGCACTTACTGCATACGTCGTCGGGGCGTTCCTTGAAGGTGGACTCAATTCCAGT
Seq A exon
TTTCCTGCCCTCCGCAATGGTCTCTATTGCCTGGAAGAAGCATTTTCGAGTAGTGTCACCGATGACCACACTCAAGCTATCATGGCTTATGTGTTCACATTAGCTGGGAAGCAACAGCAAGTGAAGTCCTTACTCCCAATCCTGGATCGGTCTGCTACAAAAACGA
Seq C2 exon
ATAATATGATATACTGGGAGAAAGACGAGAAACCCAAGGCAGACAGCTCTCCATCATTCATTCCTTCTGCACTTTCCGGTGAGACAGAGAAGACGTGCTATGTGCTGTTGGCTGTCCTTTCCCAGGACACTCCGGACCTCGATTATGCCAGCAAGATTGTGCAGTGGCTTGCCCAGCGGATGAACTCCCATGGAGGCTTCTCTGCCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007247-'32-31,'32-30,33-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.000 C2=0.169
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(10.5=100)
A:
PF076789=A2M_comp=FE(22.2=100)
C2:
PF076789=A2M_comp=FE(28.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGACAGTGACGAGGATGA
R:
CAAGCCACTGCACAATCTTGC
Band lengths:
250-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]