MmuEX6007902 @ mm10
Exon Skipping
Gene
ENSMUSG00000030287 | Itpr2
Description
inositol 1,4,5-triphosphate receptor 2 [Source:MGI Symbol;Acc:MGI:99418]
Coordinates
chr6:146405758-146502178:-
Coord C1 exon
chr6:146501787-146502178
Coord A exon
chr6:146476687-146476757
Coord C2 exon
chr6:146405758-146405802
Length
71 bp
Sequences
Splice sites
3' ss Seq
TAAACATTCTTTCCCTCCAGGTT
3' ss Score
11.63
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
AAAGAGTCCCCCAAGGGGACCTAGAGGCTCCGCTCAGGCCGGGAGCGAACTGTGGGGACGCAGAGGGCTCGCGGGCCAGGGAGGAGGAGCGAAGGTGTAGGACAGAACTTCGCCAGGAACAGGAAACCTACTGCTGGGCAGGGGCGGCGACGGCGGCGCGGGGCCATCGCAGTGTCCCCAGCGGTGGCCTCGCTGCCGCTCCTCGAGCAGAGCTGCTTGGACCCCTCTGACCCAGCGGGCCTGAGCTCACCCTTGCGTGCAGCGGAGACAGCAGGGACAGCCACAGGAGCGTGAAGCAGCATGTCTGACAAAATGTCCAGCTTCCTCTACATTGGGGACATCGTGTCCCTGTACGCGGAGGGCTCGGTCAATGGCTTCATCAGCACCCTGGG
Seq A exon
GTTGGTGGATGACCGTTGTGTGGTGCACCCAGAGGCGGGAGACCTTGCCAACCCACCCAAGAAGTTCAGAG
Seq C2 exon
CTTAATCCTGACTATCGAGATGCTCAAAATGAAGGAAAAAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030287_MULTIEX2-1/9=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.600
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PU(11.9=87.1)
A:
PF087096=Ins145_P3_rec=FE(10.6=100)
C2:
PF0281514=MIR=FE(7.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCTCACCCTTGCGTG
R:
TGAGCATCTCGATAGTCAGGA
Band lengths:
178-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types