MmuEX6007902 @ mm9
Exon Skipping
Gene
ENSMUSG00000030287 | Itpr2
Description
inositol 1,4,5-triphosphate receptor 2 [Source:MGI Symbol;Acc:MGI:99418]
Coordinates
chr6:146374977-146450621:-
Coord C1 exon
chr6:146450309-146450621
Coord A exon
chr6:146425209-146425279
Coord C2 exon
chr6:146374977-146375092
Length
71 bp
Sequences
Splice sites
3' ss Seq
TAAACATTCTTTCCCTCCAGGTT
3' ss Score
11.63
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGAGGAGGAGCGAAGGTGTAGGACAGAACTTCGCCAGGAACAGGAAACCTACTGCTGGGCAGGGGCGGCGACGGCGGCGCGGGGCCATCGCAGTGTCCCCAGCGGTGGCCTCGCTGCCGCTCCTCGAGCAGAGCTGCTTGGACCCCTCTGACCCAGCGGGCCTGAGCTCACCCTTGCGTGCAGCGGAGACAGCAGGGACAGCCACAGGAGCGTGAAGCAGCATGTCTGACAAAATGTCCAGCTTCCTCTACATTGGGGACATCGTGTCCCTGTACGCGGAGGGCTCGGTCAATGGCTTCATCAGCACCCTGGG
Seq A exon
GTTGGTGGATGACCGTTGTGTGGTGCACCCAGAGGCGGGAGACCTTGCCAACCCACCCAAGAAGTTCAGAG
Seq C2 exon
ACTGCCTGTTCAAGGTGTGCCCTATGAATCGATACTCTGCCCAGAAGCAATACTGGAAAGCCAAGCAGGCGAAACAGGGGAACCATACAGAGGCTGCCCTGCTGAAGAAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030287-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PU(11.9=87.1)
A:
PF087096=Ins145_P3_rec=FE(10.6=100)
C2:
PF087096=Ins145_P3_rec=FE(16.8=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTTCCTCTACATTGGGG
R:
AGCCTCTGTATGGTTCCCCTG
Band lengths:
171-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: