DreEX6064878 @ danRer10
Exon Skipping
Gene
ENSDARG00000011909 | itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:ZFIN;Acc:ZDB-GENE-050419-192]
Coordinates
chr18:15968902-15988247:+
Coord C1 exon
chr18:15968902-15969189
Coord A exon
chr18:15980651-15980721
Coord C2 exon
chr18:15988132-15988247
Length
71 bp
Sequences
Splice sites
3' ss Seq
TGTTCTGTTTTGCCCCTTAGGTT
3' ss Score
11.87
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATGAAGAAACGCTTCAGTTAGAGGATTCACAACTCAAAAGTCACTAACGCGGCGCGTCTCTTCTCTGGACGCCTGGATTAAAATGCGTTACTGTCAGGGCGAATAAACAAGTGGATTGATACACTGAATCGCCTGAACACATTGCGCTGGGTCACAGTGCTCAAATATCAGATAAACTACTCAAAAACCTGCAGAAATGTCGGAACACAGGTCTAGTTTCCTTCACATTGGGGATATCGTGTCTCTGTATGCGGAGGGAACTGTCAATGGATTTATCAGCACTTTAGG
Seq A exon
GTTGGTGGATGATAGATGTGTAGTGCAACCTGAGACTGGGGATCTTACAAACCCACCGAAGAAATTCAGAG
Seq C2 exon
ATTGTCTCTTCAAAGTGTGTCCTATGAATCGATACTCTGCACAGAGACAGTTCTGGAAGGCCAAACAGGGCAAGCATGGGAACAACACACAGGCTGATCTCTTCAAGAAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011909-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.080 C2=0.051
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PU(11.9=87.1)
A:
PF087096=Ins145_P3_rec=FE(10.6=100)
C2:
PF087096=Ins145_P3_rec=FE(16.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCAGAAATGTCGGAACA
R:
CCCTGTTTGGCCTTCCAGAAC
Band lengths:
172-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]