GgaEX6002981 @ galGal4
Exon Skipping
Gene
ENSGALG00000014071 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:HGNC Symbol;Acc:HGNC:6181]
Coordinates
chr1:68026464-68033042:-
Coord C1 exon
chr1:68032884-68033042
Coord A exon
chr1:68027036-68027134
Coord C2 exon
chr1:68026464-68026547
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATTTTCCTTCTGACTTCCAGGTT
3' ss Score
9.71
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTACTGCACATAAAAAGTAACAAGTACCTCACAGTTAATAAGAGATTACCAGCTCTGCTAGAGAAGAATGCTATGCGAGTGTCTTTGGATGCTGCAGGGAATGAGGGATCATGGTTTTATATACAACCATTCTGGAAACTAAGGAGCGAAGGTGACAAT
Seq A exon
GTTGTTGTTGGAGATAAAGTTGTACTGATGCCAGTCAATGCAGGGCAGCCACTGCATGCTAGCAACATTGAACTTCTAGATAACCCTGGCTGCAAAGAG
Seq C2 exon
GTTAATGCTGTCAACTGTAACACAAGCTGGAAGATAACTTTGTTCATGAAATTCAGTAGTTACCGAGATGATGTACTGAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071-'5-10,'5-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(31.1=100)
A:
PF087096=Ins145_P3_rec=FE(19.2=100)
C2:
PF087096=Ins145_P3_rec=PD(12.0=71.4),PF0281514=MIR=PU(2.0=14.3)
Main Skipping Isoform:
ENSGALT00000022784fB8544
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTGTCTTTGGATGCTGCA
R:
TCCTTTCAGTACATCATCTCGGT
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]