MmuEX0024744 @ mm10
Exon Skipping
Gene
ENSMUSG00000030287 | Itpr2
Description
inositol 1,4,5-triphosphate receptor 2 [Source:MGI Symbol;Acc:MGI:99418]
Coordinates
chr6:146417932-146422864:-
Coord C1 exon
chr6:146422706-146422864
Coord A exon
chr6:146418418-146418516
Coord C2 exon
chr6:146417932-146418015
Length
99 bp
Sequences
Splice sites
3' ss Seq
AGTGTGTTTCTGATTCCTAGATC
3' ss Score
7.19
5' ss Seq
GAGGTGAAT
5' ss Score
5.37
Exon sequences
Seq C1 exon
CTGCTGCACATAAAAAGCAACAAGTACCTGACGGTGAACAAGAGGTTACCTGCCTTGCTGGAGAAGAATGCCATGCGAGTGTCACTGGATGCTGCAGGGAACGAAGGCTCCTGGTTCTACATCCATCCGTTCTGGAAGCTGAGAAGCGAGGGTGATAAT
Seq A exon
ATCGTCGTAGGAGATAAAGTCGTTCTGATGCCTGTAAATGCTGGGCAGCCCCTGCATGCCAGCAACGTGGAGCTCTTGGACAACCCAGGCTGCAAAGAG
Seq C2 exon
GTGAATGCTGTTAATTGTAACACTAGCTGGAAAATCACTTTATTCATGAAATTCAGTTCCTATCGAGAGGATGTATTAAAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030287_MULTIEX2-6/9=4-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(23.0=100)
A:
PF087096=Ins145_P3_rec=FE(14.2=100)
C2:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(2.0=14.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAACAAGTACCTGACGGTG
R:
TCCAGCTAGTGTTACAATTAACAGCA
Band lengths:
175-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types