BtaEX6023552 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002313 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor type 2 [Source:RefSeq peptide;Acc:NP_776794]
Coordinates
chr5:83526247-83532741:+
Coord C1 exon
chr5:83526247-83526405
Coord A exon
chr5:83532291-83532389
Coord C2 exon
chr5:83532658-83532741
Length
99 bp
Sequences
Splice sites
3' ss Seq
AACTTAATTCTGATTTCCAGATT
3' ss Score
6.55
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTACTGCATATAAAAAGCAACAAGTATCTGACTGTCAACAAGAGATTACCTGCTTTACTGGAGAAGAATGCCATGCGCGTGTCCTTGGATGCTGCGGGAAATGAAGGGTCTTGGTTTTATATTCATCCCTTCTGGAAGCTGAGAAGCGAGGGCGACAAT
Seq A exon
ATTGTTGTTGGAGATAAAGTTGTTTTGATGCCCGTGAATGCAGGACAGCCACTACATGCCAGCAACATTGAACTACTCGATAATCCAGGGTGTAAAGAG
Seq C2 exon
GTGAATGCTGTTAATTGCAACACTAGCTGGAAAATCACTTTATTCATGAAATACAGTTCCTATCGAGAAGATGTACTAAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002313-'4-6,'4-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(23.0=100)
A:
PF087096=Ins145_P3_rec=FE(14.2=100)
C2:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(2.0=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGAAGAATGCCATGCG
R:
AGTACATCTTCTCGATAGGAACTGT
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]