DreEX6064874 @ danRer10
Exon Skipping
Gene
ENSDARG00000011909 | itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:ZFIN;Acc:ZDB-GENE-050419-192]
Coordinates
chr18:15989955-15994347:+
Coord C1 exon
chr18:15989955-15990113
Coord A exon
chr18:15991313-15991411
Coord C2 exon
chr18:15994264-15994347
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTTGTGTGTTTGTAGGTA
3' ss Score
10.1
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
CTTCTCCATATTAAGAGTAATAAGTATTTGACGGTGAACAAGCGTCTGCCGGCGCTGCTAGAGAAGAATGCTATGCGTGTATCTCTGGACCCTTCGGGAAACGAGGGCTCTTGGTTCTACATCCAACCTTTCTGGAAGCTGCGCAGTGAAGGAGACAAT
Seq A exon
GTAGTGGTTGGAGATAAAGTGGTCCTCATGCCTGTAAATGCAGGACAGCCTCTCCATGCCAGCAACATTGAACTCCTGGACAACAGAGGCTGCAAAGAG
Seq C2 exon
GTAAATGCTTTGAACTGCAATACTAGCTGGAAGGTGACGCTCTTCATGAAGTTCAGTGAATACAGAGATGATATTTTAAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011909-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(23.0=100)
A:
PF087096=Ins145_P3_rec=FE(14.2=100)
C2:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(2.1=14.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTGCTAGAGAAGAATGCT
R:
TCACTGAACTTCATGAAGAGCGT
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]