RnoEX6015616 @ rn6
Exon Skipping
Gene
ENSRNOG00000001804 | Itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:RGD Symbol;Acc:69649]
Coordinates
chr4:180713635-180718623:-
Coord C1 exon
chr4:180718465-180718623
Coord A exon
chr4:180714105-180714203
Coord C2 exon
chr4:180713635-180713718
Length
99 bp
Sequences
Splice sites
3' ss Seq
AGTGTGTTTCTGATTCCTAGATC
3' ss Score
7.19
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
CTACTGCACATAAAAAGCAACAAGTACCTCACCGTGAACAAGAGGTTACCTGCCTTACTGGAGAAGAATGCCATGCGTGTGTCCCTGGATGCTGCAGGGAACGAAGGGTCCTGGTTCTACATCCATCCCTTCTGGAAGCTGAGAAGCGAGGGTGATAAT
Seq A exon
ATCGTCGTGGGAGATAAAGTCGTTCTGATGCCTGTAAATGCTGGGCAGCCCCTGCATGCCAGCAACGTGGAGCTCCTGGACAACCCCGGCTGCAAAGAG
Seq C2 exon
GTGAATGCTGTTAATTGCAACACTAGCTGGAAAATCACTTTATTCATGAAGTTCAGCTCCTACCGAGAGGATGTATTAAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001804-'2-4,'2-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(29.7=100)
A:
PF087096=Ins145_P3_rec=FE(18.3=100)
C2:
PF087096=Ins145_P3_rec=PD(11.4=71.4),PF0281514=MIR=PU(2.0=14.3)
Main Skipping Isoform:
ENSRNOT00000040645fB7099
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGAAGAATGCCATGCGT
R:
ACATCCTCTCGGTAGGAGCTG
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]