BtaEX6023555 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002313 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor type 2 [Source:RefSeq peptide;Acc:NP_776794]
Coordinates
chr5:83398954-83523301:+
Coord C1 exon
chr5:83398954-83399045
Coord A exon
chr5:83459443-83459513
Coord C2 exon
chr5:83523186-83523301
Length
71 bp
Sequences
Splice sites
3' ss Seq
GAATGTTCTTTTCCTTCCAGACT
3' ss Score
8.36
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
ATGTCCGATAAAATGTCCAGCTTCCTCTATATAGGGGACATCGTGTCCCTGTACGCGGAGGGTTCGGTCAACGGTTTCATCAACACGCTGGG
Seq A exon
ACTGGTGGATGACCGATGTGTGGTGCACCCAGAAGCAGGGGACCTTGCCAACCCTCCCAAGAAGTTCCGAG
Seq C2 exon
ACTGCCTCTTTAAGGTGTGCCCTATGAACCGATATTCTGCTCAGAAGCAATATTGGAAAGCCAAGCAAGCTAAACAAGGGAACCACACAGAGGCGGCCTTGCTGAAGAAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002313-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PU(11.9=87.1)
A:
PF087096=Ins145_P3_rec=FE(10.6=100)
C2:
PF087096=Ins145_P3_rec=FE(16.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCGTGTCCCTGTACGC
R:
AATTTCTTCAGCAAGGCCGCC
Band lengths:
168-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]