MmuEX6009194 @ mm10
Exon Skipping
Gene
ENSMUSG00000052974 | Cyp2f2
Description
cytochrome P450, family 2, subfamily f, polypeptide 2 [Source:MGI Symbol;Acc:MGI:88608]
Coordinates
chr7:27131170-27133660:+
Coord C1 exon
chr7:27131170-27131357
Coord A exon
chr7:27132474-27132615
Coord C2 exon
chr7:27133216-27133660
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTTCGCCCACACAGGGC
3' ss Score
9.83
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CCCGCGTGCAGGAAGAGATTGACCGTGTGGTGGGGCGCTCGCGGATGCCGACGCTGGAAGACCGTACATCCATGCCTTACACAGATGCAGTGATCCACGAAGTGCAACGCTTTGCTGACGTCATCCCCATGAACCTGCCTCACCGTGTCACTCGGGACACACCTTTCCGGGGCTTCCTGATACCCAAG
Seq A exon
GGCACAGATGTCATCACACTCCTTAACACTGTGCACTACGACTCGGACCAGTTCAAGACGCCTCAGGAGTTCAATCCTGAACATTTTCTGGACGACAATCATTCTTTCAAAAAGAGCCCCGCCTTCATGCCATTTTCGGCTG
Seq C2 exon
GACGTCGACTGTGTCTGGGAGAGCCACTGGCGCGCATGGAGCTCTTCATATACTTCACCTCCATTCTGCAGAACTTCACATTGCAGCCGCTGGTGGATCCTGAGGACATCGACCTGACCCCGCTCAGCTCAGGGCTGGGCAATTTGCCAAGGCCTTTCCAGCTGTGTATGCACATTCGCTGAGTACTGCGCCCAGGGACCCCTGTCCTTCTTCCAGTTGGGGTTCACTGTCATAGGCCTCCATTGATATCTCTCTCACATGATCTTCCCTTAACCCTGGGCCTGCCACGTATCAGTACTTTACCCCGCCTATCTTAAGCCCATCTTCATGGAAAGAATGACGTGACAAAGGTGAAATACCCGTCTTATACGCACAGAACCTATTCTATGATGCACCCTTTTCCTGTCTGTTTGTATCATTTCCTAGTAAATATCTTAATAACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052974-'29-24,'29-22,32-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.104 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(29.6=91.3)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=PD(12.2=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGACCGTACATCCATGCC
R:
TCGATGTCCTCAGGATCCACC
Band lengths:
245-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types