RnoEX0025906 @ rn6
Exon Skipping
Gene
ENSRNOG00000032805 | Cyp2f4
Description
cytochrome P450, family 2, subfamily f, polypeptide 4 [Source:RGD Symbol;Acc:2476]
Coordinates
chr1:83944572-83947821:+
Coord C1 exon
chr1:83944572-83944759
Coord A exon
chr1:83946211-83946352
Coord C2 exon
chr1:83947362-83947821
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATGTCTCTTCGCCCACACAGGGC
3' ss Score
9.13
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
CCCGTGTGCAGGAAGAGATTGATTGTGTGGTGGGACGTTCGCGGATGCCCACGCTGGAGGACCGTGCATCCATGCCTTACACAGACGCGGTGATCCACGAAGTGCAGCGCTTTGCAGACGTCATCCCCATGAACCTGCCCCACCGCGTCATTCGGGACACACCTTTCAGGGGCTTCCTGATACCCAAG
Seq A exon
GGCACAGATGTCATCACGCTCCTTAACACCGTGCACTATGACTCCGACCAATTCAAGACCCCTCAGGAGTTCAATCCTGAGCATTTTCTGGATGCCAATCAATCCTTCAAGAAGAGCCCCGCCTTCATGCCATTTTCGGCGG
Seq C2 exon
GACGCCGACTGTGTCTGGGAGAGCCACTGGCACGCATGGAGCTGTTCATATACCTCACCTCCATTCTCCAGAACTTCACGTTGCATCCGCTGGTGGAGCCTGAGGACATCGACCTGACCCCGCTCAGCTCAGGGCTGGGCAATTTGCCAAGGCCTTTCCAGTTGTGTATGCGCATTCGCTGAGTACTGCACCAGGGGACTGCTCTGGCCCTCTTCCAGGGGTTTCACTGTTGTGGGCCTCCATTGACGTCTCTCTCACGTTCCCTTCCCTAAACCCGGGGCCTGCCACGTGTCGGTACTTTACCCTTCCTATCTTAAGCGCATCTTCATGGAAAAAATGACGTGACAAAGGGGAAATACCCATCTTATACGCACAGACCCTGTTCTGCGATGCACCCTTTTCCTGGCTGTTTGTATCATTTCCTAGTAAATACCTTACTAGTAGATGTGTGTCTGGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032805_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=PD(12.2=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCAGACGTCATCCCCATG
R:
ACACAACTGGAAAGGCCTTGG
Band lengths:
245-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]