DreEX6015443 @ danRer10
Exon Skipping
Gene
ENSDARG00000101190 | cyp2k8
Description
cytochrome P450, family 2, subfamily K, polypeptide 8 [Source:ZFIN;Acc:ZDB-GENE-080721-19]
Coordinates
chr3:12643834-12650931:+
Coord C1 exon
chr3:12643834-12644018
Coord A exon
chr3:12647208-12647349
Coord C2 exon
chr3:12650407-12650931
Length
142 bp
Sequences
Splice sites
3' ss Seq
GTTTCTCTTCTGAATTATAGGGG
3' ss Score
6.87
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
ATCGAGTTCAGGAGGAGATTGACCAGGTTCTGGGTGGCCGTGAACCAGTTGCAGAAGACAGAAAGAACTTACCGTATACAGATGCTGTGATTCATGAAACACAGAGACTGGCTAATATTCTACCACTGAATCTCCCTCATAAGACGAGCTGTGATGTTACCTTCAATGGATATTTCATCAAGAAG
Seq A exon
GGGACGTGTGTTCTGCCGCTGCTGACCTCTGTGTTGAGGGATGAGACCGAGTGGGAGACGCCTGACACTTTCAACCCTCAGCACTTTCTAGATGAGAAGGGTCAGCTGATCAAACGAGACGCCTTCATGCCTTTTTCTGCAG
Seq C2 exon
GGCGCAGGGCTTGTCTTGGAGAGAGTTTGGCCAGAATGGAGCTCTTCCTCTTCTTCACGTCTCTCCTTCAGTATTTCCGCTTCAGTCCTCCTCCTGGAGCGTCTGAAGATGAGCTGGATCTCACACCGGTGGTGGGCCTGACTTTGAACCCTTCACCCCACAAACTGTGTGCAGTCATCAGAGCGGAAAGACAACTAAACTGATCCCTTGTGAAAAGTTCAGTTCTTTATACAGTATATTACACATATGTATTATCTGATAGAGAATTATATTTAATGTGCTTTTCTGTGCATAGCATAAAGCGGTAAATGGTGCATATACCCACAGATTTTATTTCAGCCTGCCAACCTCGCTAACGGTAAACTCTTTCCATCATAAAATGAATAAATAAATCAGTGATCAAATAGATATACCATGGGCGTTGCTAGGGTTGAAAGGGATGAGGGGCTTAGCTGCAAAGAAGAAAATAAGATTTAAATAAAGATAAAAAGGCTTTAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101190-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.3=100)
A:
PF0006717=p450=FE(10.2=100)
C2:
PF0006717=p450=PD(12.4=83.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGAACCAGTTGCAGAAGA
R:
ATCTTCAGACGCTCCAGGAGG
Band lengths:
258-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]