MmuEX6009489 @ mm9
Exon Skipping
Gene
ENSMUSG00000054083 | Capn12
Description
calpain 12 [Source:MGI Symbol;Acc:MGI:1891369]
Coordinates
chr7:29674216-29675245:+
Coord C1 exon
chr7:29674216-29674275
Coord A exon
chr7:29674800-29674857
Coord C2 exon
chr7:29675175-29675245
Length
58 bp
Sequences
Splice sites
3' ss Seq
AGTGGTTCTTTCCTGATTAGGAG
3' ss Score
6.6
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCCCCCTACAAGCCCCTGGAGCTGGAGTTGGCACAGCTATTTTTGGAGCTGGCTGGAGAG
Seq A exon
GAGGAGGAACTCAACGCGCTTCAGCTGCAGACCTTAATAAGCATTGCTCTGGAACCTG
Seq C2 exon
CGAGGGCCAACACCAGGACCCCTGGAGAGATTGGGCTTAGGACCTGCGAACAGCTTGTGCAGTGTTTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054083-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACAAGCCCCTGGAGCT
R:
CCCAAAACACTGCACAAGCTG
Band lengths:
127-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: