RnoEX0016681 @ rn6
Exon Skipping
Gene
ENSRNOG00000020389 | Capn12
Description
calpain 12 [Source:RGD Symbol;Acc:1307341]
Coordinates
chr1:87073839-87074915:+
Coord C1 exon
chr1:87073839-87073898
Coord A exon
chr1:87074472-87074529
Coord C2 exon
chr1:87074845-87074915
Length
58 bp
Sequences
Splice sites
3' ss Seq
AACGGTTCTTCCCTGATTAGGAG
3' ss Score
7.34
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCCCCCTACAAGCCTCTGGAGCTGGAGTTGGCACAGCTATTTTTGGAGCTGGCTGGAGAG
Seq A exon
GAGGAGGAGCTCAATGCTCTCCAGCTGCAGACCTTAATAAGCATTGCTCTGGAGCCTG
Seq C2 exon
CTAGGAACAACACCAGGACCTCTGGAGAGATTGGCCTTAGGACCTGCGAACAGCTTGTGCAGTGTTTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020389_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAGCCTCTGGAGCTGGAG
R:
CCCAAAACACTGCACAAGCTG
Band lengths:
125-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]