RnoEX0016680 @ rn6
Exon Skipping
Gene
ENSRNOG00000020389 | Capn12
Description
calpain 12 [Source:RGD Symbol;Acc:1307341]
Coordinates
chr1:87073717-87074915:+
Coord C1 exon
chr1:87073717-87073759
Coord A exon
chr1:87073839-87073898
Coord C2 exon
chr1:87074845-87074915
Length
60 bp
Sequences
Splice sites
3' ss Seq
CTGAACTCCGCATTCCACAGGCC
3' ss Score
7.78
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGAGATCGATGACGTGATCAGCGCGGACCTGGACGCCCTCCAG
Seq A exon
GCCCCCTACAAGCCTCTGGAGCTGGAGTTGGCACAGCTATTTTTGGAGCTGGCTGGAGAG
Seq C2 exon
CTAGGAACAACACCAGGACCTCTGGAGAGATTGGCCTTAGGACCTGCGAACAGCTTGTGCAGTGTTTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020389_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATCGATGACGTGATCAGC
R:
CCCAAAACACTGCACAAGCTG
Band lengths:
114-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]