MmuEX6009490 @ mm10
Exon Skipping
Gene
ENSMUSG00000054083 | Capn12
Description
calpain 12 [Source:MGI Symbol;Acc:MGI:1891369]
Coordinates
chr7:28889073-28889838:+
Coord C1 exon
chr7:28889073-28889115
Coord A exon
chr7:28889197-28889256
Coord C2 exon
chr7:28889781-28889838
Length
60 bp
Sequences
Splice sites
3' ss Seq
TGAACTCCTCCTCCCCACAGGCC
3' ss Score
12.02
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GGAGATCGATGACGTGATCAGCGCAGACCTGGACGCCCTCCAG
Seq A exon
GCCCCCTACAAGCCCCTGGAGCTGGAGTTGGCACAGCTATTTTTGGAGCTGGCTGGAGAG
Seq C2 exon
GAGGAGGAACTCAACGCGCTTCAGCTGCAGACCTTAATAAGCATTGCTCTGGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054083_MULTIEX1-5/10=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATCGATGACGTGATCAGC
R:
CAGGTTCCAGAGCAATGCTTA
Band lengths:
101-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types