MmuEX6009490 @ mm9
Exon Skipping
Gene
ENSMUSG00000054083 | Capn12
Description
calpain 12 [Source:MGI Symbol;Acc:MGI:1891369]
Coordinates
chr7:29674092-29674857:+
Coord C1 exon
chr7:29674092-29674134
Coord A exon
chr7:29674216-29674275
Coord C2 exon
chr7:29674800-29674857
Length
60 bp
Sequences
Splice sites
3' ss Seq
TGAACTCCTCCTCCCCACAGGCC
3' ss Score
12.02
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GGAGATCGATGACGTGATCAGCGCAGACCTGGACGCCCTCCAG
Seq A exon
GCCCCCTACAAGCCCCTGGAGCTGGAGTTGGCACAGCTATTTTTGGAGCTGGCTGGAGAG
Seq C2 exon
GAGGAGGAACTCAACGCGCTTCAGCTGCAGACCTTAATAAGCATTGCTCTGGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054083-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(1.8=50.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATCGATGACGTGATCAGC
R:
CAGGTTCCAGAGCAATGCTTA
Band lengths:
101-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: