BtaEX6082179 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013239 | CAPN12
Description
Bos taurus calpain 12 (CAPN12), mRNA. [Source:RefSeq mRNA;Acc:NM_001192697]
Coordinates
chr18:48748396-48749140:-
Coord C1 exon
chr18:48749098-48749140
Coord A exon
chr18:48748924-48748983
Coord C2 exon
chr18:48748396-48748453
Length
60 bp
Sequences
Splice sites
3' ss Seq
TAAACTACCCAACCCCACAGGTC
3' ss Score
7.46
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGAGGTAGATGACGTGATCAGCGCCGACCTGCACGCCCTTATG
Seq A exon
GTCCCCTACATTCCCCTGGAGCTGGAGTTGCAGCAGCTTTTTCAGGAGCTGGCAGGAGAG
Seq C2 exon
GAGGAAGAACTTGGCGCCCCTCAGCTCCAGATCTTGTTAAGCATCGCCCTGGAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013239-'15-14,'15-13,16-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTAGATGACGTGATCAGC
R:
CCAGGGCGATGCTTAACAAGA
Band lengths:
95-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]