MmuEX6011773 @ mm10
Exon Skipping
Gene
ENSMUSG00000030539 | Sema4b
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:MGI Symbol;Acc:MGI:107559]
Coordinates
chr7:80213263-80216440:+
Coord C1 exon
chr7:80213263-80213325
Coord A exon
chr7:80215624-80215722
Coord C2 exon
chr7:80216329-80216440
Length
99 bp
Sequences
Splice sites
3' ss Seq
CATACTCTCCTTCCCCACAGCGT
3' ss Score
11.51
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CTGCTGTGGAGTGCAGATGCTGACAGGAAGCAGCAGTGCAGCTTCAAGGGCAAGGACCCAAAG
Seq A exon
CGTGACTGTCAAAACTACATCAAGATCCTCCTGCCACTCAACAGCAGCCACCTGCTCACCTGTGGCACGGCCGCCTTCAGCCCCCTGTGTGCTTACATT
Seq C2 exon
CACATAGCGAGCTTTACTTTAGCCCAAGATGAGGCCGGCAATGTCATTCTGGAGGATGGCAAGGGTCGTTGTCCCTTTGACCCCAACTTCAAGTCCACGGCTCTGGTGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030539-'12-11,'12-9,14-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(19.0=100)
A:
PF0140314=Sema=FE(30.5=100)
C2:
PF0140314=Sema=FE(8.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGAGTGCAGATGCTGAC
R:
ACCAGAGCCGTGGACTTGAAG
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types