HsaEX0057099 @ hg38
Exon Skipping
Gene
ENSG00000185033 | SEMA4B
Description
semaphorin 4B [Source:HGNC Symbol;Acc:HGNC:10730]
Coordinates
chr15:90217767-90221075:+
Coord C1 exon
chr15:90217767-90217829
Coord A exon
chr15:90219793-90219891
Coord C2 exon
chr15:90220982-90221075
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCCTCGCTCCTTCCCCCCAGCGC
3' ss Score
10.8
5' ss Seq
ATCGTGAGT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTGCTTTGGGGTGCAGACGCAGAGAAGAAACAGCAGTGCAGCTTCAAGGGCAAGGACCCACAG
Seq A exon
CGCGACTGTCAAAACTACATCAAGATCCTCCTGCCGCTCAGCGGCAGTCACCTGTTCACCTGTGGCACAGCAGCCTTCAGCCCCATGTGTACCTACATC
Seq C2 exon
AACATGGAGAACTTCACCCTGGCAAGGGACGAGAAGGGGAATGTCCTCCTGGAAGATGGCAAGGGCCGTTGTCCCTTCGACCCGAATTTCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185033-'17-21,'17-18,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.338 A=0.130 C2=0.523
Domain overlap (PFAM):
C1:
PF0140314=Sema=PD(25.0=86.7)
A:
PF0140314=Sema=FE(7.3=100)
C2:
PF0140314=Sema=FE(8.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTGGGGTGCAGACG
R:
GTCGAAGGGACAACGGCC
Band lengths:
143-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development