BtaEX0031866 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021273 | SEMA4B
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:HGNC Symbol;Acc:HGNC:10730]
Coordinates
chr21:22030848-22033753:+
Coord C1 exon
chr21:22030848-22030910
Coord A exon
chr21:22032882-22032980
Coord C2 exon
chr21:22033642-22033753
Length
99 bp
Sequences
Splice sites
3' ss Seq
CATCCTCCTCCTTCCTCCAGCGG
3' ss Score
11.12
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
CTGCTGTGGCGCGCAGATGCAGAGAGAAAAAAGCAGTGCAGTTTCAAGGGCAAAAACCCAGAG
Seq A exon
CGGGACTGTCAAAACTACATCAAGATTCTCCTGCCACTCAACAGCAGCCACTTGATCGCCTGTGGCACGGAGGCCTTCAGCCCTGCGTGCACCTACATT
Seq C2 exon
GACGTGGAGAACTTCACGCTCGCACAGGACAAGCAGGGCAACATCCTCCTGGAAGATGGCAAGGGCCGTTGTCCTTTTGACCCTAATTTCAAGTCCACGGCCCTAGTGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021273-'5-5,'5-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.6=100)
A:
PF0140314=Sema=FE(14.5=100)
C2:
PF0140314=Sema=FE(16.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCGCAGATGCAGAGAG
R:
CAATCACTAGGGCCGTGGACT
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development