RnoEX0079316 @ rn6
Exon Skipping
Gene
ENSRNOG00000025167 | Sema4b
Description
semaphorin 4B [Source:RGD Symbol;Acc:1307872]
Coordinates
chr1:142001062-142004389:+
Coord C1 exon
chr1:142001062-142001124
Coord A exon
chr1:142003533-142003631
Coord C2 exon
chr1:142004278-142004389
Length
99 bp
Sequences
Splice sites
3' ss Seq
CATGCTCTCCTTCCCCACAGCGT
3' ss Score
12.58
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
CTGCTGTGGAGTGCAGATCCTGACAGGAAGCAGCAGTGCAGCTTCAAGGGCAAGGACCCAAAG
Seq A exon
CGTGACTGTCAAAACTACATCAAGATCCTTCTGCCCCTCAACAGCAGCCATCTGCTCACCTGTGGCACCGCAGCCTTCAGCCCCCTGTGTGCTTACATT
Seq C2 exon
AACACAGCAAGCTTTACATTAGCCCGAGACGAGGCTGGCAGTGTCCTCCTAGAGGATGGCAAGGGCCGGTGTCCCTTTGACCCCAACTTCAAGTCCACGGCTCTGGTGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025167_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.6=100)
A:
PF0140314=Sema=FE(7.3=100)
C2:
PF0140314=Sema=FE(8.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTGGAGTGCAGATCCT
R:
CAGAGCCGTGGACTTGAAGTT
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]