MmuEX6013568 @ mm10
Exon Skipping
Gene
ENSMUSG00000030972 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:MGI Symbol;Acc:MGI:2444086]
Coordinates
chr7:119534762-119537329:+
Coord C1 exon
chr7:119534762-119534915
Coord A exon
chr7:119535739-119535818
Coord C2 exon
chr7:119537206-119537329
Length
80 bp
Sequences
Splice sites
3' ss Seq
CCTCCTCTTGTTTTGCTTAGACT
3' ss Score
8.09
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GAGGTGGATGGCCTTGACTGAGTCTGACATATTCTGGAACACAACTGACACTGGATGGGTGAAAGCAGCCTGGACCCTCTTCTCTGCCTGGTCCAATGGAGCTTGCATTTTTGTGCATGAGCTGCCCCGAGTTGATGCCAAAACTATTCTAAAT
Seq A exon
ACTCTCTGCAGGTTCCCAATAACCACCCTGTGCTGTGTCCCAACCCTCTTCCGGCTGCTTGTACAAGAGGATCTGACAAG
Seq C2 exon
GTACAAGTTCCAATGTCTGAGGCACTGTTTGACGGGTGGAGAGGCCCTCAACCCTGATGTGAGGGACAAGTGGAAGAGCCAGACAGGCCTGGAGCTCCATGAAGGCTATGGACAATCAGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030972_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(22.4=94.8)
A:
PF0050123=AMP-binding=FE(6.3=100)
C2:
PF0050123=AMP-binding=FE(9.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTTGACTGAGTCTGACA
R:
CGTCAAACAGTGCCTCAGACA
Band lengths:
180-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types