RnoEX0006247 @ rn6
Exon Skipping
Gene
ENSRNOG00000031211 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:RGD Symbol;Acc:1309578]
Coordinates
chr1:189252097-189259178:+
Coord C1 exon
chr1:189252097-189252250
Coord A exon
chr1:189254025-189254104
Coord C2 exon
chr1:189259055-189259178
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTACTTCTTGTTTTGTTTAGACT
3' ss Score
7.18
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
GAGGTTGATGGCCTTGACTGAATCCGACATATTCTGGAACACAACTGACACTGGTTGGGTGAAAGCAGCCTGGACTCTCTTCTCTGCCTGGGCCAATGGCGCTTGCGTTTTTGTGCATGAGCTGCCCCAAGTTGATGCCCAAACTATTCTAAAT
Seq A exon
ACTCTCTGCAGGTTCCCAATAACCACCATTTGCTGTGTCCCAACCCTCTTCCGGCTGCTTGTACAAGAGGATCTGACAAG
Seq C2 exon
GTACAAGTTCCAGTGCCTCAGACACTGTTTGGCCGGTGGAGAAGCCCTCAACTCTGACGTGAGGGACAAGTGGAAGAACCAGACAGGCCTGGAGATCCATGAAGGCTACGGACAATCAGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031211_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.3=100)
A:
PF0050123=AMP-binding=FE(6.3=100)
C2:
PF0050123=AMP-binding=FE(9.9=100)
Main Skipping Isoform:
ENSRNOT00000049380fB537
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACTGGTTGGGTGAAAGCA
R:
CACGTCAGAGTTGAGGGCTTC
Band lengths:
169-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]