MmuEX6013709 @ mm10
Exon Skipping
Gene
ENSMUSG00000062017 | Abca14
Description
ATP-binding cassette, sub-family A (ABC1), member 14 [Source:MGI Symbol;Acc:MGI:2388708]
Coordinates
chr7:120232858-120246993:+
Coord C1 exon
chr7:120232858-120232989
Coord A exon
chr7:120238405-120238534
Coord C2 exon
chr7:120246839-120246993
Length
130 bp
Sequences
Splice sites
3' ss Seq
ACTTGTTTCACTTTTGACAGGAA
3' ss Score
7.62
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AAAGCCTACTGGTTTGGAGAGCCAGCCTTAAGCAGGGAAGAGAGCCAAGTCTCTGATTTACTTTCCAGTGATTTTATGGAGCCTGAACCTGTTGGCTTAGTGGCTGGCATCCGGATTCAGCATTTGTACAAG
Seq A exon
GAATTCATTTTAAAAAACAGTACTCTGATGGCAGTAAATGACTTGTCTTTGAACTTGTATGAGGGGCAGATAACTGTTCTTCTCGGACATAACGGGGCAGGAAAAACCACCACCTTGTCCATCCTCACAG
Seq C2 exon
GTTTGTATCTTCCTACCAGAGGAAAGGTCTATATTAGTGGATATGACATCTCATCTGACATGGTTCAAATTAGAAAAAGCTTGGGCTTGTGTCCCCAGGATGACCTGTTGTTCCCGATGCTGACAGTGTCAGAACACCTTCATTTCTACTGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062017-'17-24,'17-14,19-24=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(22.1=72.7)
C2:
PF0000522=ABC_tran=FE(35.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCAGTGGAACAACTTTGC
R:
TGGGAAAGATCCTGTTTTGGGC
Band lengths:
249-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types