GgaEX6013153 @ galGal4
Exon Skipping
Gene
ENSGALG00000001967 | ABCA3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:HGNC Symbol;Acc:HGNC:33]
Coordinates
chr14:13578828-13580203:-
Coord C1 exon
chr14:13580057-13580203
Coord A exon
chr14:13579349-13579478
Coord C2 exon
chr14:13578828-13578982
Length
130 bp
Sequences
Splice sites
3' ss Seq
TGTTGACGTGATCTCCGCAGGTC
3' ss Score
9.31
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
CCCTCGTACTGGTGTGGGCAACCCAGGACTGTCATTGGGAAAGAGAAGGAGGAGGAGGAAGACCCCGAGAAAGCCCTGAAGAGCCAATACATCGAGGAGGAGCCTGCTGACCTCGTGTCGGGGATCAAAATCAAGCACCTTTCCAAG
Seq A exon
GTCTTCAAAGTGGGAAGCAAGACTAAAGAGGCAGTGAAGGACTTGACGGTTAACATGTACGAAGGGCAGATCACCGTCCTGCTGGGACACAACGGTGCTGGGAAGACCACCACTCTGTCCATGCTCACAG
Seq C2 exon
GTCTGTACTCCCCAACGAGTGGGCAGGCGTACATCAATGGCTACGAGATCTCTCAGGACATGGTTCTGATCCGCCGGAGCCTGGGGCTGTGTCCGCAGCACGACGTGCTCTTTGACAACATGACGGTGGAGGAGCACCTCCACTTCTATGCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967-'14-18,'14-17,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(22.1=72.7)
C2:
PF0000522=ABC_tran=FE(35.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGGACTGTCATTGGGAA
R:
TGTTGTCAAAGAGCACGTCGT
Band lengths:
247-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]