BtaEX6108004 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014903 | ABCA3
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 3 (ABCA3), mRNA. [Source:RefSeq mRNA;Acc:NM_001113746]
Coordinates
chr25:1812477-1814010:-
Coord C1 exon
chr25:1813867-1814010
Coord A exon
chr25:1813257-1813386
Coord C2 exon
chr25:1812477-1812631
Length
130 bp
Sequences
Splice sites
3' ss Seq
CGCCCCTGCCTCTCCTGCAGGTG
3' ss Score
12.41
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
CCCTCGTACTGGTGCGGACGCCCAAGGACGGCGCTCGGGAAGGAGGAGGAGGACGACGACCCTGAGAAGGTGCTCAGGACCGAGTACTTTGAAGCTGAGCCTGAGGACCTGGTGGCCGGGATCAAGATCAAGCACGTGTCCAAG
Seq A exon
GTGTTCAGAGTGGGGAACAAGGGCAAGGCGGCTGTCAGAGACCTGAACCTGAACCTGTACGAGGGCCAGATCACTGTCCTGCTGGGCCACAATGGCGCGGGGAAGACCACCACCCTCTCCATGCTCACGG
Seq C2 exon
GTCTCTTCCCCCCGACCAGTGGACGAGCATACATCAGCGGGTACGAAGTCTCCCAGGACATGGATCAGATCCGGAAAAGCCTAGGCCTGTGCCCACAGCATGACGTCTTGTTTGACGACCTGACCGTTGCCGAGCACCTGTATTTCTACGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014903-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.271 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(22.1=72.7)
C2:
PF0000522=ABC_tran=FE(35.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACGACGACCCTGAGAAG
R:
AGAAATACAGGTGCTCGGCAA
Band lengths:
243-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]