RnoEX6046399 @ rn6
Exon Skipping
Gene
ENSRNOG00000050057 | Abca3
Description
ATP binding cassette subfamily A member 3 [Source:RGD Symbol;Acc:1307174]
Coordinates
chr10:13755945-13757743:+
Coord C1 exon
chr10:13755945-13756088
Coord A exon
chr10:13756512-13756641
Coord C2 exon
chr10:13757589-13757743
Length
130 bp
Sequences
Splice sites
3' ss Seq
AGACTCTGACTTACCTACAGGTG
3' ss Score
7.84
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCCTCCTACTGGTGTGGGAACCCAAGAACGGTCGTAGGGAAGGAAGAGGAAGGCGGCGACCCAGAAAAGGCTTTCAGAACCGAGTACTTTGAAGCTGAGCCGGAGGACTTGGCAGCTGGGATCAAGATCAAGCACCTGTCCAAG
Seq A exon
GTGTTCCAAGTGGGTAATAAGGACAAGATGGGCATCAGAGACCTGACGCTGAACCTGTATGAAGGACAGATAACAGTCCTCCTGGGCCACAACGGTGCTGGGAAGACCACGACCATGTCTATGCTGACAG
Seq C2 exon
GTCTCTTCCCCCCTACCAGTGGGCATGCTTATATTCGTGGGTACGAGATTTCCCAAGACATGGTTCAGATCCGCAAGAGTCTGGGCCTGTGCCCCCAGCATGATGTCCTGTTTGACAACCTGACAGTTGCAGAACACCTTTACTTCTACGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050057-'17-19,'17-17,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(22.1=72.7)
C2:
PF0000522=ABC_tran=FE(35.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGGAAGGAAGAGGAAGGCG
R:
GGTGTTCTGCAACTGTCAGGT
Band lengths:
248-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]