DreEX0009922 @ danRer10
Exon Skipping
Gene
ENSDARG00000100524 | abca3b
Description
ATP-binding cassette, sub-family A (ABC1), member 3b [Source:ZFIN;Acc:ZDB-GENE-050517-2]
Coordinates
chr3:12500711-12504832:+
Coord C1 exon
chr3:12500711-12500857
Coord A exon
chr3:12501011-12501140
Coord C2 exon
chr3:12504678-12504832
Length
130 bp
Sequences
Splice sites
3' ss Seq
GTGGATTTTTACTGTTGCAGGTG
3' ss Score
8.43
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
CCCTCGTACTGGTGCAGCAGTCCCCGTGTGGCCTTTCTGAAGGAAAAGGAGGATGAAGAGGATGCAGAGAAAGCCTCAAAGGGTGAATTTATGGAAGAGGAGCCAGCTGGACTAGTCGCGGGGGTCAAGATCAAGCGTTTGGCAAAG
Seq A exon
GTGTTCAAAGTGGGAAATAAGAGCAAGGAGGCGGTGAGGGATTTAACGCTCAACATGTTTGAAGGGCAGATCACTGTCCTGCTTGGGCACAATGGAGCCGGCAAGACCACCACACTGTCAATGCTGACCG
Seq C2 exon
GTCTTTTCCCGCCCTCCAGCGGTCGTGCCTACATCAATGGATATGATATTTGTCAGGATATGGCTCTGATCCGCCGCAGTCTCGGTTTGTGTCCGCAGCATGACGTGCTCTTCGATAACCTCACCGTCAGAGAACACCTGCTCTTCTACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100524-'12-14,'12-13,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000522=ABC_tran=PU(22.1=72.7)
C2:
PF0000522=ABC_tran=FE(35.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTGTGGCCTTTCTGAAG
R:
GGTGAGGTTATCGAAGAGCACG
Band lengths:
250-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]