MmuEX6015059 @ mm10
Exon Skipping
Gene
ENSMUSG00000025479 | Cyp2e1
Description
cytochrome P450, family 2, subfamily e, polypeptide 1 [Source:MGI Symbol;Acc:MGI:88607]
Coordinates
chr7:140769096-140773206:+
Coord C1 exon
chr7:140769096-140769245
Coord A exon
chr7:140770052-140770228
Coord C2 exon
chr7:140773019-140773206
Length
177 bp
Sequences
Splice sites
3' ss Seq
CATAGTTTTGTTCTCCTTAGGCT
3' ss Score
8.67
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GGATTATTTTCAATAATGGACCCACATGGAAGGACGTGCGGAGGTTTTCCCTAAGTATCCTCCGTGACTGGGGAATGGGGAAACAGGGTAATGAGGCCCGCATCCAAAGAGAGGCACACTTCCTGGTGGAGGAGCTCAAAAAGACCAAAG
Seq A exon
GCTTACAATTACTTTTCGGATTATCTACAATATCTACCTGGAAGCCACAGAAAAGTCATGAAAAATGTGTCTGAAATAAGACAGTACACACTTGGAAAAGCCAAGGAACACCTTAAGTCACTGGACATCAACTGCCCCCGGGATGTGACTGACTGTCTCCTCATAGAGATGGAGAAG
Seq C2 exon
AGAAACTTCATGAAGAAATTGACAGGGTTATTGGGCCAAGCCGTGCCCCTGCAGTCCGAGACAGGATGAATATGCCCTACATGGACGCTGTAGTGCATGAGATTCAGAGATTCATCAACCTCGTCCCTTCCAACCTGCCCCACGAAGCAACCCGAGACACCGTGTTCCGAGGATATGTCATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025479_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(37.9=100),PF0006717=p450=PU(1.8=5.9)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=PD(0.8=1.6),PF0006717=p450=FE(36.5=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCGGAGGTTTTCCCTAAG
R:
TGGAAGGGACGAGGTTGATGA
Band lengths:
248-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types