MmuEX6015059 @ mm9
Exon Skipping
Gene
ENSMUSG00000025479 | Cyp2e1
Description
cytochrome P450, family 2, subfamily e, polypeptide 1 [Source:MGI Symbol;Acc:MGI:88607]
Coordinates
chr7:147955463-147956982:+
Coord C1 exon
chr7:147955463-147955623
Coord A exon
chr7:147955951-147956127
Coord C2 exon
chr7:147956841-147956982
Length
177 bp
Sequences
Splice sites
3' ss Seq
CATAGTTTTGTTCTCCTTAGGCT
3' ss Score
8.67
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GCCAGCCTTTTGACCCTACCTTTCTGATTGGCTGTGCACCCTGCAATGTCATTGCGGATATTCTCTTCAACAAACGCTTCGATTACGATGACAAGAAGTGTCTGGAGCTCATGAGTTTGTTCAATGAAAACTTCTACCTGCTGAGTACTCCCTGGATCCAG
Seq A exon
GCTTACAATTACTTTTCGGATTATCTACAATATCTACCTGGAAGCCACAGAAAAGTCATGAAAAATGTGTCTGAAATAAGACAGTACACACTTGGAAAAGCCAAGGAACACCTTAAGTCACTGGACATCAACTGCCCCCGGGATGTGACTGACTGTCTCCTCATAGAGATGGAGAAG
Seq C2 exon
GAAAAACACAGCCAAGAACCCATGTACACAATGGAAAATATTTCTGTGACTTTGGCCGACCTGTTCTTTGCAGGAACAGAGACCACCAGCACAACTCTGAGATATGGGCTCCTGATTCTCATGAAATACCCAGAAATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025479-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGATTGGCTGTGCACCC
R:
CTCAGAGTTGTGCTGGTGGTC
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: