RnoEX0025898 @ rn6
Exon Skipping
Gene
ENSRNOG00000012458 | Cyp2e1
Description
cytochrome P450, family 2, subfamily e, polypeptide 1 [Source:RGD Symbol;Acc:2475]
Coordinates
chr1:213516818-213518411:+
Coord C1 exon
chr1:213516818-213516978
Coord A exon
chr1:213517305-213517481
Coord C2 exon
chr1:213518270-213518411
Length
177 bp
Sequences
Splice sites
3' ss Seq
CACAGTTTTGTTCTCCTTAGCTT
3' ss Score
6.74
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GCCAGCCTTTTGACCCCACATTTCTGATTGGCTGCGCACCCTGCAATGTCATTGCGGATATCCTCTTCAACAAACGTTTCGACTACAATGACAAGAAGTGTCTGAGGCTCATGAGTTTGTTCAATGAAAACTTCTACCTGCTGAGCACCCCCTGGATCCAG
Seq A exon
CTTTACAATAACTTTGCGGATTATCTACGATACCTACCTGGAAGCCATAGAAAAATCATGAAAAATGTGTCTGAAATAAAACAGTACACACTTGAAAAAGCCAAGGAACACCTTCAGTCACTGGACATCAACTGCGCCCGGGATGTGACTGACTGTCTCCTCATAGAGATGGAGAAG
Seq C2 exon
GAAAAACACAGCCAAGAACCCATGTACACAATGGAAAATGTTTCTGTGACTTTGGCCGACCTGTTCTTTGCAGGAACTGAGACCACCAGCACAACTCTGAGATATGGGCTCCTGATCCTCATGAAATACCCAGAAATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012458-'4-11,'4-10,5-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTCTGATTGGCTGCGCAC
R:
CAGAGTTGTGCTGGTGGTCTC
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]