MmuEX6017192 @ mm10
Exon Skipping
Gene
ENSMUSG00000029102 | Hgfac
Description
hepatocyte growth factor activator [Source:MGI Symbol;Acc:MGI:1859281]
Coordinates
chr5:35043824-35044531:+
Coord C1 exon
chr5:35043824-35043955
Coord A exon
chr5:35044148-35044258
Coord C2 exon
chr5:35044357-35044531
Length
111 bp
Sequences
Splice sites
3' ss Seq
GCTTCCGGACTCTCCCCTAGCTT
3' ss Score
5.38
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
AGAAATGCTTTGATGAAACACGCTATGAGTATTTTGAGGTGGGCGACCACTGGGCCCGTGTGAGCGAGGGACATGTGGAGCAATGTGGCTGTATGGAGGGCCAGGCCCGGTGTGAAGACACCCACCACACAG
Seq A exon
CTTGTCTGAGCAGCCCATGTCTGAACGGAGGCACCTGCCACCTGATTGTGGGCACAGGGACCAGCGTCTGCACCTGCCCGTTGGGCTATGCTGGGCGGTTCTGTAACATTG
Seq C2 exon
TTCCCACAGAGCACTGCTTCCTGGGAAATGGTACAGAGTACCGAGGCGTGGCCAGCACCGCTGCCTCGGGCCTGAGCTGCCTGGCCTGGAATTCTGACCTGCTCTACCAGGAGCTGCACGTGGACTCAGTGGCTGCTGCTGTCCTGCTTGGCCTGGGCCCTCACGCTTACTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029102-'1-18,'1-15,11-18=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003913=fn1=WD(100=80.0)
A:
PF0000822=EGF=WD(100=86.8)
C2:
PF0005113=Kringle=PU(64.6=89.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTATTTTGAGGTGGGCGAC
R:
CAGCAGCAGCCACTGAGTC
Band lengths:
248-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types