DreEX6070065 @ danRer10
Exon Skipping
Gene
ENSDARG00000057498 | habp2
Description
hyaluronan binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4721]
Coordinates
chr12:31601414-31602064:+
Coord C1 exon
chr12:31601414-31601530
Coord A exon
chr12:31601701-31601817
Coord C2 exon
chr12:31601911-31602064
Length
117 bp
Sequences
Splice sites
3' ss Seq
GCTTGTATTTGCACTATTAGCCT
3' ss Score
2.53
5' ss Seq
TTGGTAAAG
5' ss Score
4.05
Exon sequences
Seq C1 exon
AGAAGAACGTGTGTAAAAAAGTGAAGTGTGGTAATGGTGATTGTGTCAGAATAAAAAAAGACCCATTTTATGAGTGCAAGTGCTGGCCTCCGTATCGGGGTTCTAAGTGCAAGAATG
Seq A exon
CCTATGCATGTAATCCAAGTCCATGCCAGAATGGGGGAACGTGTGTTAAAGGCCGTACGAGAGCAAGTTTCACATGCACTTGTCCTGAAGATTATAGTGGGAGGTTCTGCCAAGTTG
Seq C2 exon
GTTCAAACGATTGCTATGAAGGGAATGGGGAATCATACAGAGGCAATGTCAGTGAAACAATAGAAGAAATTGAGTGTTTACCCTGGAACCACAATCTTATTCCTTACAAAGAGTTTGAAGGGAATGAGAGCATTGGAGAACACAATTACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057498-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=82.5)
C2:
PF0005113=Kringle=PU(61.8=90.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTGAAGTGTGGTAATGGTGA
R:
TGTTCTCCAATGCTCTCATTCCC
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]