HsaEX6090532 @ hg38
Exon Skipping
Gene
ENSG00000148702 | HABP2
Description
hyaluronan binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4798]
Coordinates
chr10:113577150-113578798:+
Coord C1 exon
chr10:113577150-113577266
Coord A exon
chr10:113578026-113578145
Coord C2 exon
chr10:113578627-113578798
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCCCATTCCTGTGTTCACAGTGG
3' ss Score
6.75
5' ss Seq
TAGGTATGG
5' ss Score
7.37
Exon sequences
Seq C1 exon
TGCAAAATACGTGCAAGGACAACCCATGTGGCCGGGGCCAATGTCTCATTACCCAGAGTCCTCCCTACTACCGCTGTGTCTGTAAACACCCTTACACAGGTCCCAGCTGCTCCCAAG
Seq A exon
TGGTTCCTGTATGCAGGCCAAACCCCTGCCAGAATGGGGCTACCTGCTCCCGGCATAAGCGGAGATCCAAGTTCACCTGTGCCTGTCCCGACCAGTTCAAGGGGAAATTCTGTGAAATAG
Seq C2 exon
GTTCTGATGACTGCTATGTTGGCGATGGCTACTCTTACCGAGGGAAAATGAATAGGACAGTCAACCAGCATGCGTGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGAATTACAACATGTTTATGGAGGATGCTGAAACCCATGGGATTGGGGAACACAATTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148702_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=80.5)
C2:
PF0005113=Kringle=PU(63.9=91.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGTGCAAGGACAACCCATG
R:
CCATGGGTTTCAGCATCCTCC
Band lengths:
258-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains