GgaEX6041015 @ galGal3
Exon Skipping
Gene
ENSGALG00000008905 | F1NEB3_CHICK
Description
NA
Coordinates
chr6:28906953-28908186:+
Coord C1 exon
chr6:28906953-28907069
Coord A exon
chr6:28907345-28907464
Coord C2 exon
chr6:28908015-28908186
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCTCATTTTCACCTTGACAGCTT
3' ss Score
8.46
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TGGAGGACACGTGTGTGGACCACAACTGTGTCAGAGGAGACTGCCTCGTTACATTAACCAAACCTTACTATCAGTGCAGCTGTAGCCATCCCTACAAGTTACCAGACTGCCAGCAAG
Seq A exon
CTTCTTCACAGTGCCGGCCAAACCCATGCAAAAATGGAGGAATCTGTGTGCGGCACAGAATCAGATCAAAATTCACCTGCAAGTGCCCTGAACGTTACCGAGGGAGGTTTTGTGAGATTG
Seq C2 exon
AACCAGATGATTGTTATGAAGAGGACTCCTTTTATTACAGAGGAAGAGTGAACCAAGCACAGAGTGGCAGGACTTGCCTGCACTGGAATTCCCACTTGCTCTTGCGCTTCTCTATTAATGCATTTATGGAGGATGCTGAGTCTTATGGGATTGGGGAACATAACTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008905-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=80.5)
C2:
PF0005113=Kringle=PU(64.6=91.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTCAGAGGAGACTGCCT
R:
CCCCAATCCCATAAGACTCAGC
Band lengths:
248-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]