MmuEX6033753 @ mm10
Exon Skipping
Gene
ENSMUSG00000025075 | Habp2
Description
hyaluronic acid binding protein 2 [Source:MGI Symbol;Acc:MGI:1196378]
Coordinates
chr19:56310021-56311842:+
Coord C1 exon
chr19:56310021-56310137
Coord A exon
chr19:56311102-56311221
Coord C2 exon
chr19:56311671-56311842
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCCACTTGCTGTTTTCACAGTGC
3' ss Score
7.54
5' ss Seq
TAGGTATGG
5' ss Score
7.37
Exon sequences
Seq C1 exon
CACAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAG
Seq A exon
TGCTTCCGGCATGCAGGCCAAACCCCTGCCAGAATGGCGGAGTCTGTTCCCGACACAGACGGAGATCCAGGTTTACCTGTGCCTGTCCAGACCAGTATAAGGGGAAATTCTGTGAAATAG
Seq C2 exon
GTCCGGACGACTGTTATGTCGGTGATGGCTACTCTTACCGAGGCAAAGTGAGTAAGACAGTCAACCAGAACCCATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGACTTATAACATGTTTATGGAGGATGCAGAGACCCACGGGATCGCAGAGCACAACTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025075-'2-19,'2-10,7-19=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.001
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=80.5)
C2:
PF0005113=Kringle=PU(63.9=91.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCATTACCCAGAAGCACC
R:
AGAAGTTGTGCTCTGCGATCC
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types