RnoEX6007841 @ rn6
Exon Skipping
Gene
ENSRNOG00000016659 | Habp2
Description
hyaluronan binding protein 2 [Source:RGD Symbol;Acc:1302979]
Coordinates
chr1:277094329-277095788:+
Coord C1 exon
chr1:277094329-277094445
Coord A exon
chr1:277095078-277095197
Coord C2 exon
chr1:277095617-277095788
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCTGTTTTCTGTGTCCACAGTGC
3' ss Score
10.74
5' ss Seq
TAGGTATGA
5' ss Score
6.99
Exon sequences
Seq C1 exon
TCCAAAACAAGTGCAAGGACAACCCATGTGTCCAGGGCGATTGCCTCATTACCCAGACGCCTCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAG
Seq A exon
TGCTTCCGGTATGCAGACCAAATCCCTGCCAGAATGGCGGGGTCTGTTCCCGACACAGACGGAGGTCCAGGTTTAGCTGCGCCTGTCCAGACCAGTATAAGGGGAGATTCTGTGAAATAG
Seq C2 exon
GTCCGGACGACTGTTATGTCGGTGATGGCTACTCTTACCGAGGCAAAGTGAGTAGGACAGTCAACCAGAACCCATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGAATTACAACATGTTTATGGAGGATGCCGAGACCCATGGGATCGCAGATCACAACTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016659-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=80.5)
C2:
PF0005113=Kringle=PU(63.9=91.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGGACAACCCATGTGTC
R:
GGGTCTCGGCATCCTCCATAA
Band lengths:
250-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]