BtaEX6100898 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019322 | HABP2
Description
Bos taurus hyaluronan binding protein 2 (HABP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001014868]
Coordinates
chr26:34328543-34330493:+
Coord C1 exon
chr26:34328543-34328659
Coord A exon
chr26:34329695-34329814
Coord C2 exon
chr26:34330322-34330493
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCCACTCCCTGTGTTCACAGTGG
3' ss Score
8.46
5' ss Seq
TAGGTATGG
5' ss Score
7.37
Exon sequences
Seq C1 exon
TGCAAAACAAGTGCAAAAACAACCCCTGTGGCCGGGGAGACTGTCTCATTACTCAGAGTCCTCCTTACCACCGCTGTGCCTGCAAACACCCTTACAGGGGTTCAGACTGCTCCAGAG
Seq A exon
TGGTTCCTGTGTGCAGGCCAAATCCCTGCCAAAACGGTGGCACCTGCTCCCGGCAGAGGCGGAGGTCCAAGTTCACCTGTGCCTGTCCTGACCAGTTCAAGGGGAAGCTCTGTGAAATAG
Seq C2 exon
GTCCTGATGACTGCTACGTTGACGACGGCTACTCTTACCGAGGGAGAGTGAGTAAGACCATCCACCAGCACACATGCCTTTACTGGAACTCCCACCTCCTCTTGCAGGAGAAGTACAACATGTTTATGGAGGACGCTGAGGCCCACGGGATTGGGGAGCACAATTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019322-'8-8,'8-6,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=80.5)
C2:
PF0005113=Kringle=PU(63.9=91.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAAAAACAACCCCTGTGG
R:
GCCTCAGCGTCCTCCATAAAC
Band lengths:
249-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]