RnoEX6042845 @ rn6
Exon Skipping
Gene
ENSRNOG00000009572 | Hgfac
Description
HGF activator [Source:RGD Symbol;Acc:70909]
Coordinates
chr14:80970617-80971306:-
Coord C1 exon
chr14:80971175-80971306
Coord A exon
chr14:80970888-80970998
Coord C2 exon
chr14:80970617-80970791
Length
111 bp
Sequences
Splice sites
3' ss Seq
GCTTCCATACTCTCCCCTAGCTT
3' ss Score
5.94
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
AGAAGTGCTTTGATGAAACACGCTACGAGTATTTTGAGGTGGGCGACCACTGGGCCCGTGTGAGCGAGGGACATGTGGAGCAGTGCAGCTGTATCGAGGGGCAGGCCCGGTGTGAAGACACCCACCACACAG
Seq A exon
CTTGCCTGAGCAGCCCATGTCTGAATGGAGGAACCTGCCACCTGATTGTGGGCACAGGGACCAGCATCTGCGCCTGCCCGTTGGGTTATGCTGGGCGGTTCTGCAACATTG
Seq C2 exon
TTCCCACTGAGCGCTGCTTCCTGGGCAATGGAACAGAGTACCGCGGTGTGGCCAGCACCTCTGCCTCGGGCCTGAGCTGCCTGGCCTGGAATTCCGACCTGCTCTACCAGGAGCTCCATGTAGACTCAGTGGGTGCTGCTGCCCTGCTTGGCCTGGGCCCTCATGCTTACTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009572-'5-9,'5-8,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003913=fn1=WD(100=80.0)
A:
PF0000822=EGF=WD(100=86.8)
C2:
PF0005113=Kringle=PU(64.6=89.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGTATTTTGAGGTGGGCG
R:
GCACCCACTGAGTCTACATGG
Band lengths:
244-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]