GgaEX1054470 @ galGal4
Exon Skipping
Gene
ENSGALG00000006039 | SNED1
Description
sushi, nidogen and EGF-like domains 1 [Source:HGNC Symbol;Acc:HGNC:24696]
Coordinates
chr9:4398638-4399247:+
Coord C1 exon
chr9:4398638-4398754
Coord A exon
chr9:4398886-4398999
Coord C2 exon
chr9:4399074-4399247
Length
114 bp
Sequences
Splice sites
3' ss Seq
GTGCCTTCCGCTCTCCCCAGTGC
3' ss Score
10.13
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTAAACCGGACCCCTGTGCCTCAGGGCCCTGCCAGAACGGGGGCACCTGCTTCCACTACATCGGCAAGTACAAGTGTGACTGTGCCCCGGGCTACGCTGGACGGCACTGCGAGATCG
Seq A exon
TGCCATCTCCCTGCTTCCTGAGCCCCTGTGAGAATGGTGCGACCTGCGAGGAGCTCGGTGGGGACTTTGTGTGCACGTGCCCCATGGGCTACACAGGGAAGCGCTGCGGGACAG
Seq C2 exon
AGATTGACTGCGGCATGCCCAGCGCTGTGAAGCATGCCCAGGCCTCCTTCAACTCCACCACGGTGGGCTCGCTGGCCAAATACCACTGTGAGCTGGGCTACGTCCTCAGCCAGCACAACAGCCCCCGCGTCTGCCGCTCGCAGGGTGTCTGGAGCGACCCCCCTGAATGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006039_MULTIEX1-8/12=7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=77.5)
A:
PF0000822=EGF=WD(100=79.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAACCGGACCCCTGTGC
R:
GGGGCTGTTGTGCTGGCT
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]