Special

ENSMUSG00000047793 @ mm10

Biotype
protein_coding
Gene Symbol
Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:MGI Symbol;Acc:MGI:3045960]
Coordinates
chr1:93235841-93301065:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
22
chr1:93281652-93281673
+
72.41
46.96
0
Alternative 3'ss
66
chr1:93281608-93281673
+
26.8
43.16
0
Alternative 5'ss
0
NA
+
89.9
32.06
0
Alternative 5'ss
52
chr1:93282383-93282434
+
10.1
32.06
0
Alternative 5'ss
0
NA
+
36.07
55.01
0
Alternative 5'ss
28
chr1:93259780-93259807
+
63.93
55.01
0
Exon Skipping
83
chr1:93286012-93286094
+
98.59
25.59
0
Exon Skipping
174
chr1:93275297-93275470
+
83.48
47.99
0
Intron Retention
523
chr1:93271969-93272491
+
11.25
44.9
0
Intron Retention
5010
chr1:93275471-93280480
+
13.41
48.8
0
Intron Retention
301
chr1:93281351-93281651
+
54.14
70.63
0
Intron Retention
309
chr1:93282383-93282691
+
52.39
76.71
0
Intron Retention
189
chr1:93283386-93283574
+
13.46
33.24
0
Intron Retention
1129
chr1:93284667-93285795
+
16.47
48.2
0
Intron Retention
71
chr1:93285941-93286011
+
23.09
52.52
0
Intron Retention
833
chr1:93286095-93286927
+
44.36
73.48
0
Intron Retention
2284
chr1:93287024-93289307
+
16.52
38.96
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000162804 SNED1 1-to-1
Human hg19 ENSG00000162804 SNED1 1-to-1
Rat rn6 ENSRNOG00000023548 Sned1 1-to-1
Cow bosTau6 ENSBTAG00000014132 SNED1 1-to-1
Chicken galGal4 ENSGALG00000006039 SNED1 1-to-1
Chicken galGal3 ENSGALG00000006039 SNED1 1-to-1
Zebrafish danRer10 ENSDARG00000044433 sned1 1-to-1