Special

ENSMUSG00000047793 @ mm9

Biotype
protein_coding
Gene Symbol
Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:MGI Symbol;Acc:MGI:3045960]
Coordinates
chr1:95132418-95197642:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
73.49
36.97
0
Alternative 3'ss
44
chr1:95178185-95178228
+
26.51
36.97
0
Alternative 5'ss
0
NA
+
89.43
33.03
0
Alternative 5'ss
52
chr1:95178960-95179011
+
10.57
33.03
0
Alternative 5'ss
0
NA
+
36.25
56.88
0
Alternative 5'ss
28
chr1:95156357-95156384
+
63.75
56.88
0
Exon Skipping
163
chr1:95156222-95156384
+
93.4
24.49
0
Exon Skipping
174
chr1:95171874-95172047
+
83.03
48.48
0
Intron Retention
523
chr1:95168546-95169068
+
11.07
44.9
0
Intron Retention
5010
chr1:95172048-95177057
+
12.72
38.29
0
Intron Retention
301
chr1:95177928-95178228
+
55.86
70.63
0
Intron Retention
309
chr1:95178960-95179268
+
53.48
76.71
0
Intron Retention
189
chr1:95179963-95180151
+
13
33.24
0
Intron Retention
1129
chr1:95181244-95182372
+
16.72
48.2
0
Intron Retention
71
chr1:95182518-95182588
+
23.37
52.52
0
Intron Retention
833
chr1:95182672-95183504
+
43.76
75.44
0
Intron Retention
2284
chr1:95183601-95185884
+
16.57
38.96
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000162804 SNED1 1-to-1
Human hg19 ENSG00000162804 SNED1 1-to-1
Rat rn6 ENSRNOG00000023548 Sned1 1-to-1
Cow bosTau6 ENSBTAG00000014132 SNED1 1-to-1
Chicken galGal4 ENSGALG00000006039 SNED1 1-to-1
Chicken galGal3 ENSGALG00000006039 SNED1 1-to-1
Zebrafish danRer10 ENSDARG00000044433 sned1 1-to-1