Special

ENSBTAG00000014132 @ bosTau6

Biotype
protein_coding
Gene Symbol
SNED1
Description
sushi, nidogen and EGF-like domains 1 [Source:HGNC Symbol;Acc:HGNC:24696]
Coordinates
chr3:120761890-120806556:+
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
57.23
47.61
0
Alternative 3'ss
43
chr3:120785844-120785886
+
42.77
47.61
0
Alternative 3'ss
0
NA
+
13.68
14.33
0
Alternative 3'ss
26
chr3:120787087-120787112
+
86.32
14.33
0
Alternative 3'ss
19
chr3:120769421-120769439
+
12.98
14.93
0
Alternative 3'ss
22
chr3:120769418-120769439
+
84.51
17.34
0
Alternative 5'ss
0
NA
+
21.61
21.4
0
Alternative 5'ss
28
chr3:120765525-120765552
+
77.9
18.48
0
Exon Skipping
174
chr3:120778595-120778768
+
89.62
23.51
0
Exon Skipping
114
chr3:120786789-120786902
+
94.72
20.92
0
Intron Retention
1422
chr3:120787384-120788805
+
9.65
18.92
0
Intron Retention
1918
chr3:120788990-120790907
+
19.22
31.2
0
Intron Retention
764
chr3:120791021-120791784
+
33.68
15.6
0
Intron Retention
4689
chr3:120798730-120803418
+
17.07
14.97
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000162804 SNED1 1-to-1
Human hg19 ENSG00000162804 SNED1 1-to-1
Mouse mm10 ENSMUSG00000047793 Sned1 1-to-1
Mouse mm9 ENSMUSG00000047793 Sned1 1-to-1
Rat rn6 ENSRNOG00000023548 Sned1 1-to-1
Chicken galGal4 ENSGALG00000006039 SNED1 1-to-1
Chicken galGal3 ENSGALG00000006039 SNED1 1-to-1
Zebrafish danRer10 ENSDARG00000044433 sned1 1-to-1