BtaEX0033933 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014132 | SNED1
Description
sushi, nidogen and EGF-like domains 1 [Source:HGNC Symbol;Acc:HGNC:24696]
Coordinates
chr3:120778278-120784917:+
Coord C1 exon
chr3:120778278-120778391
Coord A exon
chr3:120778595-120778768
Coord C2 exon
chr3:120784804-120784917
Length
174 bp
Sequences
Splice sites
3' ss Seq
GGGCTGCCCTGTCCTTGCAGAGG
3' ss Score
9.5
5' ss Seq
ACGGTGACT
5' ss Score
5.33
Exon sequences
Seq C1 exon
CCCCCTCGCCCTGCTTCCGGAGCCCGTGCATGAATGGGGGCACCTGCGAGGACCTAGGCACAGACTTCTCCTGCCACTGCCAAGCAGGGTACACAGGACGCCGGTGCCAGGCAG
Seq A exon
AGGTAGACTGCGGGCCCCCCGGCGAGGTGCAGCATGCCACCCTGCGATTCAACGGCACCCGACTGGGCTCAGTGGCCCTGTACTTGTGTGACCGAGGCTACAGCCCAAGCGCCTCCAGCCATGTCCGGGTGTGCCAGCCACAGGGCGTCTGGAGCGAGCCCCCCCAGTGCCACG
Seq C2 exon
AAATCGACGAGTGCCGATCCCAGCCGTGCCTGCATGGGGGCTCCTGCCAGGACCGCATCGCTGGGTACCTGTGCGTCTGCAGCCCAGGGCGTGAAGGCACCCACTGTGAGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014132_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
NO
C2:
PF0000822=EGF=WD(100=79.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCCCTGCTTCCGGAG
R:
CACAGTGGGTGCCTTCACG
Band lengths:
218-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development